Your vehicle should have had similar EVAP (LPFET) results at both smog stations. The only thing which could have possiblely made a difference in test results could have been if the fuel tank level was higher during the second test; assuming if you had filled up between smog checks.
With more fuel in the gas tank, and less space to fill NOx (nitrous oxide is filled in the gas tank during the EVAP test in order to measure pressure drop), it is possible pressure build-up in the tank during the LPFET test was high enough not to cause a failure. If this was not the case (you had not filled up the gas tank between smog inspections), we can not speculate on why your vehicle failed at one station and passed at another. The EVAP test is fairly straight forward, and should be administered identically at all smog test stations.